Wow. I thought this shit was common knowlege.
As far as cylinder head port sizes and how the head flows, 90-94 4G63 NA, and 90-94 turbo are IDENTICAL. The difference between 6 bolt and 1g 7bolt heads are the headstud sizes, 12mm on the 6 bolt and 11mm on the 7bolt. The 7 bolt head can be drilled over 1mm in those holes to accomodate the 6 bolt studs/bolts.
NA 4G63 heads have different valvetrain parts including cams and valvesprings. So if you use one of those, make sure when it is assembled it is assembled with turbo valvetrain. As far as the different cam profiles between the auto and the manual tranny, I doubt that it's noticable with regular bolt ons, but who gives a fuck anyhow, just swap out the cams.